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Table 3 The computation time for association analysis

From: SNPAnalyzer 2.0: A web-based integrated workbench for linkage disequilibrium analysis and association analysis

Software program

Number of SNPs

 

1000

5000

10000

20000

50000

100000

SNPAnalyzer 2.0

2

10

21

42

104

208

BEAGLE

3

12

24

47

118

235

PLINK

5

23

47

96

237

472

  1. The time unit is seconds and we used a desktop with a 3.0 GHz processor and 2 GB memory as a test bed.
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BMC Bioinformatics

ISSN: 1471-2105

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