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Table 1 Solvent accessibility of indel sites and indel proteins.

From: Indel PDB: A database of structural insertions and deletions derived from sequence alignments of closely related proteins

Minimal indel length

1

5

10

15

20

Indel – avg. solvent accessibility

59.53

60.36

60.03

58.46

60.50

indel protein – avg. solvent accessibility

44.68

43.52

43.46

42.05

42.80

T test value

168.20

130.52

73.96

45.96

34.83

P value

0

0

0

0

0

  1. Solvent accessibility was measured by (the number of water molecules in contact with a residue) multiplied by 10 or (residue water exposed surface in Angstrom)2, according to the DSSP program. The higher the solvent accessibility value, the more exposed the residue is.