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Table 3 Macromolecule catabolism

From: Relating gene expression data on two-component systems to functional annotations in Escherichia coli

 

OmpR/EnvZ

YfhA

UvrY

DcuSR

ArcB

Protein Function

garP

-0.92

0.29

-0.48

0.22

-0.77

D-galactarate transporter

garL

-0.37

0.29

-0.34

0.17

-0.24

2-dehydro-3-desoxygalactarate aldolase

garR

-0.74

0.19

-0.27

0.09

-0.42

Tartronate semialdehyde reductase

garD

-0.64

0.64

-0.21

0.35

-0.33

D-galactarate dehydratase

gudP

-0.74

0.19

-0.27

-

-0.42

D-glucarate transporter

gudX

-0.33

0.24

-0.08

0.24

-0.18

D-glucarate dehydratase

ptsA

0.06

0.18

-

0.18

-0.02

Phosphotransferase system I

  1. Column 1: Genes that are part of the function macromolecule catablism. The first gene in each operon is printed in bold.
  2. Column 2 through 6: Two-component systems that are involved in the regulation of the genes in column 1. These are the most dramatic peaks in Fig. 6, top panel.
  3. Column 7: Functions of the proteins that are encoded by the genes in column 1.