TY - JOUR AU - Etzold, T. U. A. AU - Argos, P. PY - 1998 DA - 1998// TI - SRS: information retrieval system for molecular biology data banks JO - Methods Enzymol VL - 266 UR - https://doi.org/10.1016/S0076-6879(96)66010-8 DO - 10.1016/S0076-6879(96)66010-8 ID - Etzold1998 ER - TY - JOUR AU - Birney, E. PY - 2004 DA - 2004// TI - An Overview of Ensembl JO - Genome Research VL - 14 UR - https://doi.org/10.1101/gr.1860604 DO - 10.1101/gr.1860604 ID - Birney2004 ER - TY - JOUR AU - Haas, L. S. P. AU - Kodali, P. AU - Kotlar, E. AU - Rice, J. AU - Swope, W. PY - 2001 DA - 2001// TI - DiscoveryLink: A system for integrated access to life sciences data sources JO - IBM systems Journal VL - 40 UR - https://doi.org/10.1147/sj.402.0489 DO - 10.1147/sj.402.0489 ID - Haas2001 ER - TY - STD TI - LSR OMG[http://www.omg.org/lsr] UR - http://www.omg.org/lsr ID - ref4 ER - TY - STD TI - caBIO[http://cabio.nci.nih.gov/] UR - http://cabio.nci.nih.gov/ ID - ref5 ER - TY - CHAP AU - Senger, M. R. P. AU - Oinn, T. PY - 2003 DA - 2003// TI - SOAPLab – a unified Sesame door to analysis tools BT - UK e-Science All Hands Meeting Nottingham, UK ID - Senger2003 ER - TY - JOUR AU - Reich, M. L. T. AU - Gould, J. AU - Lerner, J. AU - Tamayo, P. AU - Mesirov, J. PY - 2006 DA - 2006// TI - GenePattern 2.0 JO - Nat Genet VL - 38 UR - https://doi.org/10.1038/ng0506-500 DO - 10.1038/ng0506-500 ID - Reich2006 ER - TY - JOUR AU - Marzolf, B. D. E. AU - Moss, P. AU - Campbell, D. AU - Johnson, M. AU - Galitski, T. PY - 2006 DA - 2006// TI - SBEAMS-Microarray: database software supporting genomic expression analyses for systems biology JO - BMC Bioinformatics VL - 7 UR - https://doi.org/10.1186/1471-2105-7-286 DO - 10.1186/1471-2105-7-286 ID - Marzolf2006 ER - TY - STD TI - LexGrid[http://informatics.mayo.edu/LexGrid/] UR - http://informatics.mayo.edu/LexGrid/ ID - ref9 ER - TY - CHAP AU - Goble, C. PY - 2005 DA - 2005// TI - Putting Semantics into e-Science and Grids in Proc E-Science BT - 1st IEEE Intl Conf on e-Science and Grid Technologies. Melbourne, Australia ID - Goble2005 ER - TY - JOUR AU - Oinn, T. A. M. AU - Ferris, J. AU - Marvin, D. AU - Senger, M. AU - Greenwood, M. AU - Carver, T. AU - Glover, K. AU - Pocock, M. AU - Wipat, A. AU - Li, P. PY - 2004 DA - 2004// TI - Taverna: a tool for the composition and enactment of bioinformatics workflows JO - Bioinformatics VL - 20 UR - https://doi.org/10.1093/bioinformatics/bth361 DO - 10.1093/bioinformatics/bth361 ID - Oinn2004 ER - TY - CHAP AU - Cao, J. PY - 2003 DA - 2003// TI - GridFlow: Workflow Management for Grid Computing BT - 3rd Intl Symposium on Cluster Computing and the Grid. IEEE ID - Cao2003 ER - TY - CHAP AU - Amin, K. PY - 2004 DA - 2004// TI - GridAnt: A Client-Controllable Grid Workflow system BT - #7th Intl Conf on System Sciences PB - Hawaii CY - IEEE ID - Amin2004 ER - TY - JOUR AU - Keller, A. PY - 2002 DA - 2002// TI - Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search JO - Anal Chem VL - 74 UR - https://doi.org/10.1021/ac025747h DO - 10.1021/ac025747h ID - Keller2002 ER - TY - CHAP AU - Scaffidi, C. S. M. AU - Myers, B. PY - 2005 DA - 2005// TI - Estimating the Numbers of End Users and End User Programmers BT - Proceedings of 2005 IEEE Symposium on Visual Languages and Human-Centric Computing Dallas, Texas ID - Scaffidi2005 ER - TY - JOUR AU - Quackenbush, J. PY - 2006 DA - 2006// TI - Top-down standards will not serve systems biology JO - Nature VL - 440 UR - https://doi.org/10.1038/440024a DO - 10.1038/440024a ID - Quackenbush2006 ER - TY - JOUR AU - Wilkinson, M. AU - Links, M. PY - 2002 DA - 2002// TI - BioMOBY: An open source biological web services proposal JO - Briefings in Bioinformatics VL - 3 UR - https://doi.org/10.1093/bib/3.4.331 DO - 10.1093/bib/3.4.331 ID - Wilkinson2002 ER - TY - JOUR AU - Clark, T. AU - Martin, S. AU - Liefeld, T. PY - 2004 DA - 2004// TI - Globally distributed object identification for biological knowledgebases JO - Brief Bioinform VL - 5 UR - https://doi.org/10.1093/bib/5.1.59 DO - 10.1093/bib/5.1.59 ID - Clark2004 ER - TY - STD TI - ISB Informatics[http://www.systemsbiology.org/informatics] UR - http://www.systemsbiology.org/informatics ID - ref19 ER - TY - CHAP AU - Goldberg, I. PY - 2005 DA - 2005// TI - The Open Microscopy Environment (OME) Data Model and XML File: Open Tools for Informatics and Quantitative Analysis in Biological Imaging BT - Genome Biol ID - Goldberg2005 ER - TY - JOUR AU - Winograd, T. PY - 1979 DA - 1979// TI - Beyond programming languages JO - Commun ACM VL - 22 UR - https://doi.org/10.1145/359131.359133 DO - 10.1145/359131.359133 ID - Winograd1979 ER - TY - STD TI - jBPM JBOSS[http://www.jboss.com/products/jbpm] UR - http://www.jboss.com/products/jbpm ID - ref22 ER - TY - STD TI - ODE Apache[http://ode.apache.org] UR - http://ode.apache.org ID - ref23 ER - TY - STD TI - BIODAS[http://www.biodas.org] UR - http://www.biodas.org ID - ref24 ER - TY - STD TI - EJB Sun[http://java.sun.com/products/ejb] UR - http://java.sun.com/products/ejb ID - ref25 ER - TY - STD TI - JBOSS[http://www.jboss.org] UR - http://www.jboss.org ID - ref26 ER - TY - STD TI - Jackrabbit Apache[http://jackrabbit.apache.org] UR - http://jackrabbit.apache.org ID - ref27 ER - TY - STD TI - LSID OMG[http://www.omg.org/cgi-bin/doc?dtc/04–05–01] UR - http://www.omg.org/cgi-bin/doc?dtc/04-05-01 ID - ref28 ER - TY - STD TI - LSID Implementation[http://lsids.sourceforge.net] UR - http://lsids.sourceforge.net ID - ref29 ER - TY - STD TI - OMG[http://www.omg.org] UR - http://www.omg.org ID - ref30 ER - TY - STD TI - OWL W3C[http://www.w3.org/TR/owl-features] UR - http://www.w3.org/TR/owl-features ID - ref31 ER - TY - STD TI - DublinCore[http://dublincore.org/documents/dces] UR - http://dublincore.org/documents/dces ID - ref32 ER - TY - STD TI - RDF[http://www.w3.org/RDF] UR - http://www.w3.org/RDF ID - ref33 ER - TY - JOUR AU - Fielding, R. AU - Taylor, R. PY - 2002 DA - 2002// TI - Principled Design of the Modern Web Architecture JO - ACM Transactions on Internet Technology VL - 2 UR - https://doi.org/10.1145/514183.514185 DO - 10.1145/514183.514185 ID - Fielding2002 ER - TY - STD TI - SOAP W3C[http://www.w3.org/TR/soap] UR - http://www.w3.org/TR/soap ID - ref35 ER - TY - STD TI - Virtuoso[http://www.openlinksw.com] UR - http://www.openlinksw.com ID - ref36 ER - TY - STD TI - SPARQL W3C[http://www.w3.org/TR/rdf-sparql-query] UR - http://www.w3.org/TR/rdf-sparql-query ID - ref37 ER - TY - STD TI - OASIS[http://www.oasis-open.org] UR - http://www.oasis-open.org ID - ref38 ER - TY - STD TI - jUDDI Apache[http://ws.apache.org/juddi] UR - http://ws.apache.org/juddi ID - ref39 ER - TY - STD TI - WSDL W3C[http://www.w3.org/TR/wsdl] UR - http://www.w3.org/TR/wsdl ID - ref40 ER -