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Table 1 Significantly over-represented GO biological processes

From: MAID : An effect size based model for microarray data integration across laboratories and platforms

GO over-represented categories

GOBPID

P value

OddsRatio

ExpCount

Count

Size

immune response

GO:0006955

8.39E-008

3.56

11.25

31

196

organismal physiological process

GO:0050874

1.35E-007

2.69

24.44

50

426

response to biotic stimulus

GO:0009607

4.71E-007

3.18

12.74

32

222

defense response

GO:0006952

4.76E-007

3.24

12.11

31

211

response to stimulus

GO:0050896

2.75E-005

2.15

28.23

49

492

regulation of caspase activity

GO:0043281

3.20E-004

22.41

0.4

4

7

response to pest, pathogen or parasite

GO:0009613

1.01E-003

2.72

6.83

16

119

response to other organism

GO:0051707

1.32E-003

2.64

7

16

122

physiological process

GO:0007582

4.77E-003

2.2

146.25

157

2549

  1. Shows the top ten over-represented GO biological process categories obtained from the list of genes determined to be significant using MAID (Micro Array Data Integration Model). The over-represented GO categories are ordered according their statistical significance in decreasing order (Count designates for each GO category term tested, the number of genes from the significant gene list that are associated with that term, Size designates the total number of genes associated with each GO term tested and ExpCount designates the expected number of genes obtained by chance alone for each GO term tested).