GenCLiP: a software program for clustering gene lists by literature profiling and constructing gene co-occurrence networks related to custom keywords

Table 2 Processed keywords for exploring keloid pathogenesis.

Keyword^a	Plural Flag^b	Weight	Synonym Flag^c	Keyword	Plural Flag	Weight	Synonym Flag
*SCAR	1	100	1	ENDOTHELIAL	0	2	9
*KELOID	1	30,000	2	VASCULAR	0	2	9
*DERMIS	0	11	3	HYPOXIA	0	21	10
SKIN	1	10	3	HYPOXIC	0	20	10
*CUTIS	0	3	3	IMMUNE	0	2	11
*CORIUM	0	2	3	IMMUNOGLOBULIN	0	1	11
*DERMA	0	1	3	*IMMUNOSUPPRESSIVE	0	1	11
*HYPODERMIS	0	1	3	*PARANEOPLASTIC	0	1	12
FIBROBLAST	1	11	4	CARCINOMA	1	1	12
*MYOFIBROBLAST	1	10	4	TUMOR	1	1	12
MATRIX	0	10	5	CANCER	1	1	12
COLLAGEN	1	11	6	APOPTOSIS	0	2	13
PROCOLLAGEN	1	10	6	APOPTOTIC	0	1	13
*HYPERTROPHIC	0	11	7	*GROWTH FACTOR	1	1	14
*HYPERPLASIA	1	2	7	CYTOKINE	1	1	14
PROLIFERATION	1	2	7	*INVASION	0	21	15
INFECTION	1	1	8	*INVADE	0	20	15
INFLAMMATION	1	1	8	ADHESION	1	10	15
INFLAMMATORY	0	1	8	DEGRADATION	0	21	16
ANGIOGENESIS	0	11	9	*COLLAGENASE	1	20	16
ANGIOGENIC	0	10	9

^aAn asterisk indicates a term that was added manually by the user.
^bThe plural flag ID "1" means the keyword can occur in the literature in its singular or plural form.
^cKeywords having the same synonym flag ID (larger than zero) are considered one entity.

ISSN: 1471-2105