Computational identification of ubiquitylation sites from protein sequences

BMC Bioinformatics

Table 3 The LOOCV performances of the SVM with various kinds of features:

	Feature	Window size w	C	γ	ACC (%)	SEN (%)	SPE (%)	MCC	AUC
1	Informative physicochemical properties (UbiPred)	21	4	2^-1	84.44	83.44	85.43	0.69	0.85
2	All physicochemical properties	17	1	2^-4	72.19	70.86	73.51	0.44	0.74
3	Amino acid identity	13	2	2^-2	65.67	57.33	74.00	0.32	0.70
4	Evolutionary information	13	1	2^-7	66.33	72.00	60.67	0.33	0.71

informative physicochemical properties (UbiPred), amino acid identity, evolutionary information, and all physicochemical properties.

ISSN: 1471-2105