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Figure 6 | BMC Bioinformatics

Figure 6

From: MSDmotif: exploring protein sites and motifs

Figure 6

Ligand binding sensitivity of the new patterns. Ligands are referred by those three letters code. The charts are obtained by the use of "Motif binding statistics" interface. The colour of the bars corresponds to the bond types where red used for covalent bonds, pink for ionic bonds, blue for hydrogen bonds and green for van-dre-Waals bonds. The patterns become more selective when the interactions are restricted to main-chain only. http://www.ebi.ac.uk/msd-srv/msdmotif/barchartpattern?pattern1=[DN]{GYW}[DQNTS]G[DQNTS]G{GPW}[ACGHILV]. http://www.ebi.ac.uk/msd-srv/msdmotif/barchartpattern?pattern1=[AILV][DILNQS][DGNPV][ACDGST][DEGITV][GARW][EDFSV][EILNVW].

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