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Figure 1 | BMC Bioinformatics

Figure 1

From: A fast structural multiple alignment method for long RNA sequences

Figure 1

Stem candidates, stem fragments and stem components. A stem candidate (a pair of underlined positions) comprises four overlapping stem fragments. A fragment consists of a 5' (left) component and a 3' (right) component. X i (blue box) and X α i MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0xfr=xfr=xc9adbaqaaeGacaGaaiaabeqaaeqabiWaaaGcbaGaemiwaG1aaSbaaSqaaGGaciab=f7aHnaaBaaameaacqWGPbqAaeqaaaWcbeaaaaa@3071@ (red boxe) are 1-continuous stem components.

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