Table 5 Summary of accuracies for all three datasets. The summary of SPS and MCC values (%) for all three multiple alignment datasets are presented. Average(all): the results of the average value of the SPS or MCC for all families. Average(sub): the average SPS or MCC for the subset of families. FoldalignM consists of two modes: FoldalgnM_FoldalignM and FoldalignM_McCaskill, which are separately evaluated and indicated as FoldalignM(1) and FoldalignM(2) respectively.
From: A fast structural multiple alignment method for long RNA sequences
Dataset | Â | MXSCARNA | Murlet | ProbCons | MAFFT | ClustalW | StrAl | RNASampler |
|---|---|---|---|---|---|---|---|---|
original dataset | Average(all) | 78/78 | 79/74 | 78/67 | 75/63 | 72/61 | 73/63 | 70/74 |
| Â | Average(sub) | 85/86 | 85/85 | 85/77 | 82/74 | 78/68 | 80/72 | 78/86 |
BRAlibaseII | Average(all) | 84/80 | 85/78 | 85/75 | 83/73 | 81/72 | 83/73 | 83/78 |
| Â | Average(sub) | 83/82 | 84/79 | 84/76 | 82/75 | 80/72 | 82/75 | 83/80 |
Kiryu et al.'s dataset | Average(all) | 77/72 | 80/71 | 79/65 | 74/54 | 68/48 | 69/54 | 68/70 |
| Â | Average(sub) | 82/72 | 86/72 | 85/68 | 80/60 | 73/52 | 75/59 | 72/72 |
| Â | Â | RNAlara | Locarna | FoldalignM(1) | FoldalignM(2) | MARNA | PMmulti | Stemloc |
original dataset | Average(all) | 68/65 | Â | Â | Â | Â | Â | Â |
| Â | Average(sub) | 77/81 | 74/83 | 73/85 | 69/83 | 72/75 | 73/83 | 74/83 |
BRAlibaseII | Average(all) | 85/76 | 83/78 | Â | Â | Â | Â | Â |
| Â | Average(sub) | 86/79 | 83/79 | 82/79 | 79/78 | 74/69 | 77/75 | 75/79 |
Kiryu et al.'s dataset | Average(all) | 70/61 | 64/66 | Â | Â | 62/54 | Â | Â |
| Â | Average(sub) | 77/69 | 70/73 | 64/72 | 57/72 | 60/60 | 52/54 | 76/72 |