Table 1 Sliding window size and OU pattern types (oligomer lengths) selected for sequences of different length present in the SeqWord database.
Sequence length | Sliding window | Step | OU pattern type |
|---|---|---|---|
> 2 Mbp | 8 kbp | 2 kbp | 4 mer |
from 1 mbp to 2 Mbp | 5 kbp | 0.5 kbp | 4 mer |
from 0.5 mbp to 1 Mbp | 3 kbp | 0.3 kbp | 3 mer |
< 0.5 Mbp | 1.5 kbp | 0.15 kbp | 3 mer |