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Table 2 Microarray probesets with profiles closest to the Q-PCR profile for the cellulose synthase-like gene HvCslF3.

From: Combining transcriptional datasets using the generalized singular value decomposition

Barley1 probeset Dist. Annotation (E-value)
Contig12242 0.17 UDP-glucose:sterol Gt [As] (1 × 10-67)
Contig14077 0.40 putative glycosyltransferase [Hv]; (1 × 10-160)
HVSMEa0015K08r2 0.42 putative XTH [Os] (3 × 10-13)
HV06O09u 0.46 putative glucosyltransferase [Os] (1 × 10-35)
Contig11619 0.48 ceramide glucosyltransferase [Ga] (8 × 10-51)
Contig6602 0.52 putative glycoprotein 3-α-L Ft [Hv] (0)
Contig14830 0.55 putative glucosyltransferase [Os] (1 × 10-113)
HE01I24u 0.57 xyloglucan endo-1,4-β-D-Gl [Hv] (6 × 10-27)
Contig11983 0.64 galactosyltransferase family [At] (1 × 10-113)
HV12D17u 0.70 putative GDP-fucose protein-Ft [Os](2 × 10-52)
Rbags19k14 0.74 putative glucosyltransferase [Os] (2 × 10-20)
Contig2958 0.74 XTH [Hv] (1 × 10-170)
Contig18221 0.75 XYLT [At] (1 × 10-111)
Contig23070 0.76 GALT family-like protein [Os] (3 × 10-70)
HVSMEl0008B06r2 0.76 putative GT family [Os] (5 × 10-28)
HVSMEl0013E16r2_s 0.77 putative xyloglucan Ft [At] (8 × 10-10)
Contig14826 0.78 putative glucosyltransferase [Os] (6 × 10-58)
Contig15434 0.79 glycogenin GT [Os] (4 × 10-53)
Contig15291 0.80 putative glucosyltransferase [Os] (7 × 10-48)
Contig5876 0.81 putative glucosyl transferase [Os] (0)
  1. The distance in the second column is the Euclidean distance in the subspace spanned by arraylets 5–7 of the GSVD defined by 10 genes in common between the two datasets (HvCesA1, HvCesA2, HvLimit-Dextrinase Inhibitor, HvCesA4, HvGlyT5, HvCesA8, HvUXS3, HvCslC4, HvEndogluII, HvGSL3).
  2. Abreviations: As – Avena sativa; At -Arabidopsis thaliana; Ga – Gossypium arboretum; Hv – Hordeum vulgare; Os – Oryza sativa; Ft – fucosyltransferase; GALT – galactosyltransferase; Gl – glucanase; Gt – glucosyltransferase; XTH -xyloglucan endo-transglycosylase; XYLT – beta-(12)-xylosyltransferase.