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Table 2 Number of significant pairs in chromosome data

From: Determining significance of pairwise co-occurrences of events in bursty sequences

 

C

D

 

UL

FL

FL(r)

UL

FL

FL(r)

chr

0.01

0.001

0.01

0.001

0.01

0.001

0.01

0.001

0.01

0.001

0.01

0.001

1

134

68

108

60

96

41

143

71

123

62

87

40

2

138

73

36

29

84

41

153

83

33

22

87

35

3

146

90

118

62

90

47

162

87

131

71

98

45

4

192

120

116

60

104

53

217

122

110

64

107

50

5

138

85

90

60

98

51

146

79

92

51

88

37

6

146

83

119

60

107

59

165

79

131

58

112

40

7

147

78

86

52

87

37

161

93

117

62

100

43

8

130

76

96

57

79

30

159

86

115

65

93

39

9

200

119

158

101

125

58

243

125

196

102

137

54

10

154

100

126

70

93

45

164

97

137

75

103

50

  1. Number of significant pairs for 10 Mbp regions in human chromosomes 1–10. Results are shown for window sizes w = 300 and two p-value thresholds, for null models UL, FL, and FL(r), for co-occurrence scores C and D. Minimum distance parameter d = 20 bp. Number of event types is 115, and thus the total number of undirected pairs is (1152 - 115)/2 + 115 = 6670 and number of directed pairs is 1152 = 13225.
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BMC Bioinformatics

ISSN: 1471-2105

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