Table 3 Summary of most abundant merged and non-merged OPFs from the three whalebone communities.
From: A statistical toolbox for metagenomics: assessing functional diversity in microbial communities
Number of ORFs in OPF | Putative annotation | Representative GenBank Accession | ||
|---|---|---|---|---|
AGZO | AHAA | AHAI | Â | Â |
Merged OPFs | ||||
386 | 32 | 26 | Histidine kinase | YP_341128 |
229 | 175 | 166 | ABC transporter | ZP_01203057 |
137 | 21 | 22 | Aerotaxis sensor receptor | YP_339458 |
91 | 27 | 33 | Sensory box protein | YP_341105 |
75 | 39 | 65 | ATP-dependent RNA helicase protein | NP_518660 |
74 | 62 | 51 | Translation elongation factor | ZP_01061839 |
56 | 85 | 104 | Acyl-CoA dehydrogenase | ZP_01106089 |
52 | 68 | 66 | Aldehyde dehydrogenase | YP_341708 |
49 | 65 | 93 | Copper transport membrane protein | ZP_01060525 |
49 | 53 | 72 | Acetyl-CoA acetyltransferase | ZP_01165108 |
44 | 45 | 66 | Cation efflux protein | YP_678123 |
Non-merged OPFs | ||||
8 | 5 | 3 | Thioredoxin | ZP_01901399 |
7 | 3 | 5 | Conserved hypothetical protein | ZP_01054178 |
6 | 5 | 3 | GTP-binding protein LepA | YP_745328 |
6 | 3 | 9 | DNA topoisomerase IV, subunit A | YP_756797 |
5 | 6 | 3 | 50S ribosomal protein, L20 | ZP_01108363 |
5 | 6 | 3 | 50S ribosomal protein, L14 | ZP_00952078 |
5 | 4 | 7 | 30S ribosomal protein, S11 | ZP_01302802 |
4 | 8 | 5 | Recombination protein, RecR | ZP_00948629 |
3 | 4 | 6 | DNA helicase, RuvB | YP_357747 |