SlowFaster, a user-friendly program for slow-fast analysis and its application on phylogeny of Blastocystis

BMC Bioinformatics

Table 1 Overview of results from slow-fast analysis of Blastocystis alignment

Dataset	Posit.	Length	1a				1b				2a				2b
			ML	MP	LD	MD	ML	MP	LD	MD	ML	MP	LD	MD	ML	MP	LD	MD
Untr.	1471	1289		92	99		54			58	50	33					46	35
S8	1467	1250		93	99		51			54	45			30		34	43
S7	1460	1187	57	96	99	54					42	34		36			37
S6	1452	1121	62	96	99	48					48	35		38			38
S5	1438	1026	61	91	97	55					54	42		34			35
S4	1407	844	63	87	99	73					57			36		45	36
S3	1371	674	59	82	97	85					-	38	67	73	-
S2	1330	522	68	75	98	97					-	30	64	64	-
S1	1258	343		49	92	90	71				-	-	90	76	-	-
S0	1097	124

For each dataset (the first column) ranging from untreated initial alignment (Untr.) to alignment BlastoS0, the number of alignment positions (Posit.) and the length of the most parsimonious tree (Length) are noted in the second and third columns, respectively. In the remaining columns is given the bootstrap support from the four tree reconstructing methods for four topologies of interest. In some cases (marked with a dash) the method was unable to decide between the given node and its alternative.

ISSN: 1471-2105