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Figure 2 | BMC Bioinformatics

Figure 2

From: Gene Vector Analysis (Geneva): A unified method to detect differentially-regulated gene sets and similar microarray experiments

Figure 2

Precision (1-FDR) of gene set queries methods with Pearson based p-values calibrated on GEO and CMAP compared to permutation based p-values and no permutation. Also included, for comparison are GSEA q-value (based on FDR) and GSEA p-value (based on FWER). We compared Precision across the various queries for threshold of gene sets (N) plotted on the x-axis (as described in Methods).

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