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Table 1 Top-scoring differentially expressed gene sets found for pairs of related microarray experiments (from the category in column 1 above) using Geneva.

From: Gene Vector Analysis (Geneva): A unified method to detect differentially-regulated gene sets and similar microarray experiments

Experiment Rank p-value Name Source
Muscle 1 7.89E-10 Glycolysis_and_Gluconeogenesis GenMAPP
Muscle 2 6.93E-09 Costamere: CC GOA
Muscle 3 4.37E-07 superpathway of glycolysis, pyruvate dehydrogenase, TCA, and glyoxylate bypass HumanCyc
Muscle 4 4.86E-07 Contractile Fiber Part: CC GOA
Muscle 5 6.54E-07 Z Disc: CC GOA
Muscle 6 9.20E-07 Small Leucine-Rich Proteoglycan (SLRP) Molecules BioCarta
Muscle 7 1.69E-06 aspartate degradation II HumanCyc
Muscle 8 4.80E-06 Myofibril: CC GOA
Muscle 9 4.87E-06 gluconeogenesis HumanCyc
Muscle 10 5.38E-06 Contractile Fiber: CC GOA
Malaria 1 1.60E-08 Immune Response-Regulating Signal Transduction: BP GOA
Malaria 2 1.60E-08 Immune Response-Regulating Cell Surface Receptor Signaling Pathway: BP GOA
Malaria 3 1.60E-08 Immune Response-Activating Signal Transduction: BP GOA
Malaria 4 1.60E-08 Immune Response-Activating Cell Surface Receptor Signaling Pathway: BP GOA
Malaria 5 1.60E-08 Antigen Receptor-Mediated Signaling Pathway: BP GOA
Malaria 6 1.67E-08 T Cell Receptor Signaling Pathway: BP GOA
Malaria 7 1.76E-08 Regulation Of T Cell Receptor Signaling Pathway: BP GOA
Malaria 8 2.69E-08 Regulation Of Antigen Receptor-Mediated Signaling Pathway: BP GOA
Malaria 9 2.64E-07 Activation Of Csk By cAMP-Dependent Protein Kinase Inhibits Signaling Through The T Cell Receptor BioCarta
Malaria 10 5.02E-07 Locomotion: BP GOA
AD 1 1.13E-11 Proton-Transporting Two-Sector ATPase Complex: CC GOA
AD 2 1.13E-11 Hydrogen-Translocating V-Type ATPase Complex: CC GOA
AD 3 9.31E-11 Long-Term Memory: BP GOA
AD 4 4.91E-10 aspartate degradation II HumanCyc
AD 5 1.78E-09 Proton-Transporting ATP Synthase Complex: CC GOA
AD 6 1.78E-09 Proton-Transporting ATP Synthase Complex (sensu Eukaryota): CC GOA
AD 7 1.78E-09 Hydrogen-Translocating F-Type ATPase Complex: CC GOA
AD 8 1.95E-09 Hydrogen Ion Transporter Activity: MF GOA
AD 9 6.44E-09 Monovalent Inorganic Cation Transporter Activity: MF GOA
AD 10 7.75E-09 Ubiquinol-Cytochrome-C Reductase Activity: MF GOA
  1. Pearson correlation was used, and was calibrated against a corpus of experiments from GEO (see Methods).
  2. The p-value reported is the product of the p-values for the two related experiments.
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