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Table 1 Parameters from Nearest-Neighbor (NN), Binomial-Neighborhood (BN) and Hierarchical Binomial-Neighborhood (HBN)

From: Integration of relational and hierarchical network information for protein function prediction

NN BN HBN
k = 2 k = 2 k = 2
N = 6 N = 6 N = 6
. p 1 MathType@MTEF@5@5@+=feaagaart1ev2aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0xfr=xfr=xc9adbaqaaeGaciGaaiaabeqaaeqabiWaaaGcbaGaemiCaa3aa0baaSqaaiabigdaXaqaaiabgEHiQaaaaaa@2F4A@ = 0.0661 p1 = 0.2927
. p 0 MathType@MTEF@5@5@+=feaagaart1ev2aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0xfr=xfr=xc9adbaqaaeGaciGaaiaabeqaaeqabiWaaaGcbaGaemiCaa3aa0baaSqaaiabicdaWaqaaiabgEHiQaaaaaa@2F48@ = 0.0085 p0 = 0.0992
. f* = 0.0106 f = 0.2186
P = 0.3333 P = 0.3381 P = 0.6566
  1. This table contains the parameters and the corresponding probabilities estimated by the three methods, as discussed in the paper, when predicting whether yeast gene YGL017W has GO term GO:0045941, positive regulation of transcription.