Skip to main content

Table 1 Parameters from Nearest-Neighbor (NN), Binomial-Neighborhood (BN) and Hierarchical Binomial-Neighborhood (HBN)

From: Integration of relational and hierarchical network information for protein function prediction

NN

BN

HBN

k = 2

k = 2

k = 2

N = 6

N = 6

N = 6

.

p 1 ∗ MathType@MTEF@5@5@+=feaagaart1ev2aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0xfr=xfr=xc9adbaqaaeGaciGaaiaabeqaaeqabiWaaaGcbaGaemiCaa3aa0baaSqaaiabigdaXaqaaiabgEHiQaaaaaa@2F4A@ = 0.0661

p1 = 0.2927

.

p 0 ∗ MathType@MTEF@5@5@+=feaagaart1ev2aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0xfr=xfr=xc9adbaqaaeGaciGaaiaabeqaaeqabiWaaaGcbaGaemiCaa3aa0baaSqaaiabicdaWaqaaiabgEHiQaaaaaa@2F48@ = 0.0085

p0 = 0.0992

.

f* = 0.0106

f = 0.2186

P = 0.3333

P = 0.3381

P = 0.6566

  1. This table contains the parameters and the corresponding probabilities estimated by the three methods, as discussed in the paper, when predicting whether yeast gene YGL017W has GO term GO:0045941, positive regulation of transcription.
Back to article page

BMC Bioinformatics

ISSN: 1471-2105

Contact us