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Table 3 SynBlast results for Danio rerio, Ensembl release 46 (Aug 2007), Zv7 assembly with the human ParaHox clusters as query.

From: SynBlast: Assisting the analysis of conserved synteny information

Reference DrA1
chr.24
20 M
pdx1
DrA2
chr.5
60 M
gsh1
DrB
chr.7
50 M
DrB1
chr.14
37 M
cdx4
DrC1
chr.20
20 M
gsh2
DrC2
chr.1
10 M
DrD1?
chr.14
53 M
DrD1?
chr.14
22 M
DrD1
chr.14
25 M
cdx1a
DrD2
chr.21
43 M
CDX1
DrD2?
chr.21
36 M
HsA/C1 2.49 0.25 0.52 0.05 -0.65 - - - 1.3 - (0.13)
CDX2 8343 2291 1605 1537 1922 - - - 1757 - (1112)
chr.13 2/1 7/2 5/5 9/6 40/3 - - - 3/4 - (8/8)
HsB/C2 (-0.41) (-0.7) 2.53 0.47 (-0.04) -0.02 - - -0.75 -0.14 -
CDX4 (237) (139) 2934 1192 (114) 669 - - 543 183 -
chr.X (19/25) (31/38) 1/1 3/2 (7/41) 5/7 - - 34/10 12/32 -
HsC/C3 -1.47 -1.56 -0.33 -2.52 3.23 0.91 - - -0.46 - (-0.37)
GSH2 1478 507 1424 1595 4756 1880 - - 469 - (488)
chr.4 54/4 55/7 19/5 56/3 1/1 3/2 - - 26/9 - (23/8)
HsD/C4 -0.6 (-2.77) (-3.57) -3.44 -3.31 (-0.06) 0.79 0.03 -0.41 0.18 5.27
CDX1 439 (254) (2238) 953 940 (991) 1796 1514 846 1107 2550
chr.5 13/41 (24/57) (42/2) 41/12 37/13 (7/11) 2/4 6/5 11/16 4/9 1/1
  1. The logRatioSum score, the gene order alignment score, and the corresponding ranks are given. Putative orthologs are depicted in bold. In combination, the two scores provide the best means to rank orthologous loci at the top. Numbers in parentheses indicate that the target region (column) is only approximately matched, and/or that only a single query gene was found. See text for more detail.