Table 4 MisPred analysis of NCBI's GNOMON-predicted proteins
From: Identification and correction of abnormal, incomplete and mispredicted proteins in public databases
NCBI/GNOMON | |||||||||
|---|---|---|---|---|---|---|---|---|---|
Conflict 1 | Number of proteins | Identified as containing an extracellular domain | Percentage | Identified as suspicious by MisPred | Percentage* | False Positives | Percentage* | True errors | Percentage* |
Homo sapiens | 10125 | 287 | 2.83% | 93 | 32.4% | ND | ND | ND | ND |
Monodelphis domestica | 20110 | 1293 | 6.43% | 253 | 19.57% | ND | ND | ND | ND |
Gallus gallus | 14816 | 909 | 6.14% | 246 | 27.06% | ND | ND | ND | ND |
Danio rerio | 25356 | 2108 | 8.31% | 562 | 26.66% | ND | ND | ND | ND |
Conflict 2 | Number of proteins | Identified as containing an extra- and an intracellular domain | Percentage | Identified as suspicious by MisPred | Percentage* | False Positives | Percentage* | True errors | Percentage* |
Homo sapiens | 10125 | 4 | 0.04% | 0 | 0% | 0 | 0.00% | 0 | 0.00% |
Monodelphis domestica | 20110 | 32 | 0.16% | 6 | 18.75% | 3 | 9.38% | 3 | 9.38% |
Gallus gallus | 14816 | 22 | 0.15% | 5 | 22.73% | 3 | 13.64% | 2 | 9.09% |
Danio rerio | 25356 | 31 | 0.12% | 11 | 35.48% | 5 | 16.13% | 6 | 19.35% |
Conflict 3 | Number of proteins | Â | Â | Identified as suspicious by MisPred | Percentage* | False Positives | Percentage* | True errors | Percentage* |
Homo sapiens | 10125 | Â | Â | 0 | 0.00% | 0 | 0.00% | 0 | 0.00% |
Monodelphis domestica | 20110 | Â | Â | 2 | 0.01% | 0 | 0.00% | 2 | 0.01% |
Gallus gallus | 14816 | Â | Â | 2 | 0.01% | 1 | 0.01% | 1 | 0.01% |
Danio rerio | 25356 | Â | Â | 7 | 0.03% | 3 | 0.01% | 4 | 0.02% |
Conflict 4 | Number of proteins | Proteins containing domains suitable for the study of domain integrity | Percentage | Identified as suspicious by MisPred | Percentage* | False Positives | Percentage* | True errors | Percentage* |
Homo sapiens | 10125 | 1632 | 16.12% | 255 | 15.63% | ND | ND | ND | ND |
Monodelphis domestica | 20110 | 6224 | 30.95% | 111 | 1.78% | ND | ND | ND | ND |
Gallus gallus | 14816 | 3564 | 24.06% | 370 | 10.38% | ND | ND | ND | ND |
Danio rerio | 25356 | 4387 | 17.31% | 385 | 8.78% | ND | ND | ND | ND |
Conflict 5 | Number of proteins | Â | Â | Identified as suspicious by MisPred | Percentage* | False Positives | Percentage* | True errors | Percentage* |
Homo sapiens | 10125 | Â | Â | 1 | 0.01% | 0 | 0.00% | 1 | 0.01% |
Danio rerio | 25356 | Â | Â | 25 | 0.10% | 24 | 0.09% | 1 | 0.004% |