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Table 3 AFP and Runtime from FATCAT and TOPS++FATCAT.

From: TOPS++FATCAT: Fast flexible structural alignment using constraints derived from TOPS+ Strings Model

Methods AFPs (total) AFPs (average) Runtime (sec) Average Runtime (sec)
flexible_FATCAT 28,550,682 15,019 2,738 1.44029
flexible_TOPS++FATCAT 1,007,601 530 122 0.06417
rigid_FATCAT 28,550,682 15,019 2,743 1.44292
rigid_TOPS++FATCAT 1,007,601 530 122 0.06417