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Table 3 Theoretical (T) and empirical (E) sensitivities of optimal seeds in the four models. Letters C, D, M, Z indicate the CHK, DOG, MUS and ZFS comparisons, respectively. C do represents sensitivity values for the optimal DOG seeds (do) when applied to the CHK (C) model. Values are averaged within each weight group.

From: Universal seeds for cDNA-to-genome comparison

W

C co

C do

C mo

C zo

D co

D do

D mo

D zo

10T

0.881

0.875

0.878

0.881

0.998

0.999

0.999

0.998

10E

0.904

0.896

0.897

0.905

0.983

0.984

0.984

0.982

11T

0.808

0.800

0.803

0.808

0.996

0.996

0.996

0.996

11E

0.876

0.859

0.856

0.875

0.976

0.978

0.976

0.976

12T

0.717

0.708

0.715

0.716

0.990

0.990

0.990

0.989

12E

0.822

0.819

0.822

0.831

0.967

0.970

0.968

0.967

13T

0.628

0.619

0.624

0.627

0.978

0.979

0.979

0.977

13E

0.779

0.756

0.761

0.790

0.954

0.954

0.953

0.953

14T

0.555

0.542

0.549

0.554

0.967

0.969

0.969

0.965

14E

0.735

0.706

0.731

0.763

0.943

0.942

0.943

0.943

15T

0.483

0.472

0.480

0.481

0.952

0.955

0.954

0.949

15E

0.706

0.676

0.686

0.733

0.927

0.927

0.926

0.930

16T

0.412

0.400

0.407

0.410

0.931

0.935

0.935

0.927

16E

0.667

0.610

0.627

0.679

0.912

0.909

0.910

0.910

W

M co

M do

M mo

M zo

Z co

Z do

Z mo

Z zo

10T

0.992

0.992

0.993

0.992

0.663

0.647

0.654

0.663

10E

0.978

0.978

0.979

0.978

0.745

0.716

0.725

0.751

11T

0.981

0.982

0.982

0.981

0.547

0.529

0.534

0.547

11E

0.970

0.969

0.969

0.969

0.678

0.636

0.626

0.676

12T

0.963

0.963

0.963

0.961

0.432

0.417

0.426

0.433

12E

0.957

0.958

0.958

0.957

0.570

0.562

0.565

0.591

13T

0.932

0.933

0.934

0.930

0.342

0.329

0.335

0.344

13E

0.940

0.938

0.940

0.941

0.504

0.464

0.474

0.525

14T

0.904

0.905

0.906

0.900

0.276

0.260

0.267

0.278

14E

0.925

0.922

0.927

0.929

0.436

0.394

0.425

0.488

15T

0.867

0.870

0.871

0.861

0.220

0.207

0.215

0.222

15E

0.909

0.906

0.908

0.913

0.395

0.358

0.365

0.447

16T

0.822

0.825

0.826

0.815

0.172

0.160

0.166

0.173

16E

0.889

0.882

0.886

0.890

0.350

0.283

0.302

0.368