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Figure 3 | BMC Bioinformatics

Figure 3

From: Combining Shapley value and statistics to the analysis of gene expression data in children exposed to air pollution

Figure 3

Overlap curves. Overlap of relevant gene lists generated using different selection criteria. The x-axis represents the number of genes selected as relevant genes, and the y-axis represents the overlap (%) of two gene lists for a given number of relevant genes. Figure (a) shows the overlap curves between different selection methods when the microarray game v ¯ T P + MathType@MTEF@5@5@+=feaagaart1ev2aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0xfr=xfr=xc9adbaqaaeGaciGaaiaabeqaaeqabiWaaaGcbaGafmODayNbaebadaahaaWcbeqaaiabdsfaujabdcfaqjabgUcaRaaaaaa@30CB@ is considered; Figure (b) shows the overlap between different selection methods when the microarray game v ¯ T P MathType@MTEF@5@5@+=feaagaart1ev2aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0xfr=xfr=xc9adbaqaaeGaciGaaiaabeqaaeqabiWaaaGcbaGafmODayNbaebadaahaaWcbeqaaiabdsfaujabdcfaqjabgkHiTaaaaaa@30D6@ is considered. Green line: fold-change rank ordering versus absolute Shapley value difference rank ordering (for first 1000 genes ranked); blue line: p-value rank ordering (p < 0.05) on t-test versus Shapley value difference rank ordering; red line: p-value rank ordering (p < 0.05) on t-test versus p-value rank ordering (p < 0.05) on CASh; orange line: p-value rank ordering (p < 0.05) on CASh versus absolute Shapley value difference rank ordering.

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