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Table 3 Cross-classification of sample type with latent classes obtained from proposed method

From: Model-based clustering of DNA methylation array data: a recursive-partitioning algorithm for high-dimensional data arising as a mixture of beta distributions

Class bladder blood (ad) blood (nb) brain cervical H & N kidney lung placenta pleura sm intestine Total
000 3       2 12   8 3 28
0010         19   5   24
0011         20   2 1 23
0100 2    2 1   4 2   2 1 14
01010     1   4       5
0101100       3       3
0101101       3       3
010111      2        2
01100          1 1   2
01101          5    5
0111          13    13
1000    3          3
100100    2          2
100101    4          4
1001100    3          3
1001101    4          4
100111    5          5
101    34          34
1100   18           18
1101   12           12
11100     5         5
11101     3         3
1111     1   1       2
Total 5 30 55 12 3 11 6 53 19 18 5 217
  1. Classes are labeled with the sequence vector representing the terminal node from which the class was derived.
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BMC Bioinformatics

ISSN: 1471-2105

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