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Table 3 Cross-classification of sample type with latent classes obtained from proposed method

From: Model-based clustering of DNA methylation array data: a recursive-partitioning algorithm for high-dimensional data arising as a mixture of beta distributions

Class

bladder

blood (ad)

blood (nb)

brain

cervical

H & N

kidney

lung

placenta

pleura

sm intestine

Total

000

3

     

2

12

 

8

3

28

0010

       

19

 

5

 

24

0011

       

20

 

2

1

23

0100

2

  

2

1

 

4

2

 

2

1

14

01010

   

1

 

4

     

5

0101100

     

3

     

3

0101101

     

3

     

3

010111

    

2

      

2

01100

        

1

1

 

2

01101

        

5

  

5

0111

        

13

  

13

1000

  

3

        

3

100100

  

2

        

2

100101

  

4

        

4

1001100

  

3

        

3

1001101

  

4

        

4

100111

  

5

        

5

101

  

34

        

34

1100

 

18

         

18

1101

 

12

         

12

11100

   

5

       

5

11101

   

3

       

3

1111

   

1

 

1

     

2

Total

5

30

55

12

3

11

6

53

19

18

5

217

  1. Classes are labeled with the sequence vector representing the terminal node from which the class was derived.
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BMC Bioinformatics

ISSN: 1471-2105

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