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Table 1 Number of occurrence of putative repetitive sequences (PRS) in datasets

From: ReRep: Computational detection of repetitive sequences in genome survey sequences (GSS)

Name

Length

A

B

C

# reads in A

# reads in B

# reads in C

PRS_1

717

4

67

885

2

16

2

PRS_2

452

2

4

5

2

4

1

PRS_3

541

2

2

1

2

2

1

PRS_4

729

4

5

42

3

4

2

PRS_5

566

4

29

79

4

29

24

TanPRS_1

61

21

138

933

2

16

2

  1. The number of occurrence of each PRS was calculated after parsing BLAST results using an e-value with cut-off e-20 in the following datasets: (A) 970_GSS; (B) 9644_GSS_EMBL; and (C) the complete assembled genome of L. braziliensis. Number of reads (#reads) in dataset A and B and chromosomes (#Chr.) in dataset C where the corresponding PRS was found.
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BMC Bioinformatics

ISSN: 1471-2105

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