ReRep: Computational detection of repetitive sequences in genome survey sequences (GSS)

BMC Bioinformatics

Table 2 Detection of PRS with different t parameter in the three reference datasets

The number of PRSs found by ReRep with different t parameter for the three datasets is given in the first line (#PRS). The detected PRSs of each individual run are BLASTed against the whole genome sequence (e-value e^-20). The number of hits is reported in the following lines: # no hit and # 1 hit indicates false positives. # > 2 hits indicate PRSs occurring more than twice in the genome. # > 30 hits indicates highly repetitive PRSs. An l parameter of 400 was used.

ISSN: 1471-2105