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Table 2 Experimental results TMHMM.

From: IgTM: An algorithm to predict transmembrane domains and topology in proteins

  

TMHMM database

  

Sn

Sp

CC

AC

Sov 3 obs

100%

≥ 90%

≥ 75%

igTM

exp5

0.808

0.810

0.707

0.702

0.680

0.474

0.603

0.756

 

exp6

0.819

0.796

0.715

0.707

0.707

0.490

0.618

0.789

TMHMM 2.0

0.900

0.879

0.830

0.827

0.915

0.339

0.636

0.920

Pred-TMR

0.786

0.898

0.769

0.767

0.843

0.200

0.378

0.723

Prodiv-TMHMM

0.832

0.854

0.778

0.768

0.866

0.269

0.523

0.848

HMMTOP

0.849

0.894

0.810

0.802

0.913

0.255

0.537

0.844

PHOBIUS

0.891

0.850

0.804

0.924

0.936

0.367

0.635

0.902

MEMSAT3

0.896

0.843

0.799

0.912

0.801

0.412

0.750

0.926

TMpred

0.834

0.796

0.741

0.738

0.899

0.331

0.540

0.813

  1. Experimental results and comparison with results of other methods, with the TMHMM α-helix database. As discussed in the Performance Measures section, 100%, ≤ 90% and ≥ 75% stand for segments correctly detected in that percentage.
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BMC Bioinformatics

ISSN: 1471-2105

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