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Table 4 Experimental results TMPDB-α-nR.

From: IgTM: An algorithm to predict transmembrane domains and topology in proteins

  

TMPDB-α-nR

  

Sn

Sp

CC

AC

Sov 3 obs

100%

≥ 90%

≥ 75%

igTM

exp5

0.637

0.757

0.571

0.533

0.488

0.431

0.516

0.623

 

exp6

0.698

0.771

0.618

0.578

0.511

0.487

0.575

0.674

TMHMM 2.0

 

0.814

0.813

0.728

0.710

0.818

0.335

0.569

0.805

Pred-TMR

 

0.775

0.826

0.696

0.700

0.823

0.183

0.376

0.688

Prodiv-TMHMM

 

0.823

0.802

0.720

0.712

0.841

0.272

0.543

0.802

HMMTOP

 

0.823

0.782

0.699

0.699

0.875

0.257

0.486

0.777

PHOBIUS

 

0.845

0.791

0.717

0.860

0.881

0.333

0.559

0.847

MEMSAT 3

 

0.820

0.808

0.711

0.714

0.828

0.328

0.582

0.808

TMpred

 

0.765

0.747

0.643

0.643

0.813

0.264

0.441

0.673

  1. Experimental results and comparison with results of other methods, with the TMPDB-α-nR α-helix database. As discussed in the Performance Measures section, 100%, ≤ 90% and ≥ 75% stand for segments correctly detected in that percentage.
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BMC Bioinformatics

ISSN: 1471-2105

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