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Table 6 Experimental results 101pred-tmr.

From: IgTM: An algorithm to predict transmembrane domains and topology in proteins

  

101-PRED-TMR-DB

  

Sn

Sp

CC

AC

Sov 3 obs

100%

≥ 90%

≥ 75%

igTM

exp5

0.793

0.821

0.697

0.692

0.651

0.522

0.613

0.725

 

exp6

0.801

0.820

0.718

0.709

0.714

0.423

0.577

0.739

TMHMM 2.0

0.899

0.871

0.822

0.817

0.909

0.346

0.625

0.899

Pred-TMR

0.814

0.909

0.792

0.795

0.873

0.229

0.416

0.751

Prodiv-TMHMM

0.831

0.840

0.772

0.760

0.864

0.297

0.542

0.828

HMMTOP

0.862

0.890

0.811

0.808

0.926

0.258

0.546

0.846

PHOBIUS

0.895

0.836

0.798

0.796

0.936

0.375

0.636

0.883

MEMSAT 3

0.889

0.834

0.787

0.790

0.893

0.432

0.732

0.913

TMpred

0.845

0.775

0.725

0.732

0.908

0.343

0.530

0.798

  1. Experimental results and comparison with results of other methods, with the 101pred-tmr α-helix database. As discussed in the Performance Measures section, 100%, ≥ 90% and ≥ 75% stand for segments correctly detected in that percentage.
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BMC Bioinformatics

ISSN: 1471-2105

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