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Table 2 Assembly of the patterns discovered in Gamma-proteobacteria.

From: Evaluation of phylogenetic footprint discovery for predicting bacterial cis-regulatory elements and revealing their evolution

Alignment Reverse complement Sig
act...........cag. .ctg...........agt 24.76
act..........aca.. ..tgt..........agt 24.01
actgta............ ............tacagt 12.28
.ctg..........cag. .ctg..........cag. 39.62
.ctg.........aca.. ..tgt.........cag. 32.08
.ctg........tac... ...gta........cag. 24.98
.ctg...........agt act...........cag. 24.76
.ctg.ata.......... ..........tat.cag. 24.58
.ctgtat........... ...........atacag. 22.41
.ctg......tat..... .....ata......cag. 22.01
.ctg.......ata.... ....tat.......cag. 15.71
.ctg..tat......... .........ata..cag. 13.90
.ctg...ata........ ........tat...cag. 12.79
..tgt.........cag. .ctg.........aca.. 32.08
..tgt..........agt act..........aca.. 24.01
..tgt........aca.. ..tgt........aca.. 22.22
..tgtata.......... ..........tataca.. 19.79
..tgt.......tac... ...gta.......aca.. 15.66
..tgt.tat......... .........ata.aca.. 15.32
..tgt..ata........ ........tat..aca.. 11.04
..tgt......ata.... ....tat......aca.. 10.97
...gta........cag. .ctg........tac... 24.98
...gta.......aca.. ..tgt.......tac... 15.66
...gtatat......... .........atatac... 12.67
....tat.......cag. .ctg.......ata.... 15.71
....tat......aca.. ..tgt......ata.... 10.97
actg tatatatatacag t actg tatatatatacag t best consensus
  1. The selected dyads (sig ≥ 10) can be aligned on the most significant one (CTGn10CAG). The "best" consensus of the alignment, obtained by retaining the highest scoring letter at each position, is ACTGTATATATATACAGT.