Table 1 Number of ESTs, clusters, SSRs and polymorphic SSRs of chicken, rice, Arabidopsis, Brassica, potato and tomato
From: Large-scale identification of polymorphic microsatellites using an in silico approach
| Â | chicken | rice | Arabidopsis | Brassica | potato | tomato |
|---|---|---|---|---|---|---|
ESTs | 599,330 | 1,211,078 | 734,275 | 163,750 | 219,765 | 249,794 |
Non-redundant sequences1 | 283,434 | 493,818 | 224,994 | 58,260 | 72,381 | 54,182 |
Clusters1 | 44,654 | 35,154 | 33,052 | 20,468 | 25,228 | 21,229 |
Singletons1 | 238,780 | 458,664 | 191,942 | 37,792 | 47,153 | 32,953 |
ESTs with SSRs (%)2 | 74,297 (12%) | 336,569 (28%) | 127,757 (17%) | 14,968 (9%) | 29,481 (13%) | 28,728 (11%) |
SSRs Non-redundant sequences (%)2 | 40,020 (14%) | 133,861 (27%) | 38,096 (17%) | 13,251 (23%) | 10,537 (15%) | 7,163 (13%) |
Singletons with SSRs (%)2 | 31,119 (13%) | 118,649 (26%) | 29,843 (16%) | 7,328 (19%) | 5,717 (12%) | 3,261 (10%) |
SSR in clusters (%)2 | 8,901 (20%) | 15,212 (43%) | 8,253 (25%) | 5,923 (29%) | 4,820 (19%) | 3,902 (18%) |
Polymorphic SSRs3 (%) | 1,724 (19%) | 2,646 (17%) | 1,248 (15%) | 997 (17%) | 1,080 (22%) | 265 (7%) |
Polymorphic SSRs with primers (%) | 1,667 (97%) | 2,555 (97%) | 1,163 (93%) | 937 (94%) | 1,053 (97%) | 263 (99%) |
% polymorphism in long SSRs4 | 15% | 11% | 12% | 13% | 17% | 6% |
% polymorphism in short SSRs5 | 36% | 23% | 30% | 40% | 46% | 14% |