From: Large-scale identification of polymorphic microsatellites using an in silico approach
species | Â | Dia- | Tri-a | Pentaa | Othersb | total | Densityc |
---|---|---|---|---|---|---|---|
chicken | all | 846 (49%) | 378 (22%) | 386 (22%) | 114 (7%) | 1724 (100%) | 71.51 |
 | coding | 95 | 70 | 38 | 9 | 212 | 55.13 |
 | 5'UTR1 | 19 | 33 | 24 | 10 | 86 | 137.66 |
 | 3'UTR2 | 155 | 54 | 77 | 24 | 310 | 74.81 |
 | TSS3 | 1 | 3 | 3 | 1 | 8 |  |
rice | all | 1070 (40%) | 1113 (42%) | 320 (12%) | 143 (5%) | 2646 (100%) | 93.47 |
 | coding | 154 | 372 | 86 | 26 | 638 | 57.33 |
 | 5'UTR1 | 294 | 285 | 69 | 32 | 680 | 227.16 |
 | 3'UTR2 | 342 | 121 | 70 | 36 | 569 | 92.66 |
 | TSS3 | 5 | 0 | 1 | 1 | 7 |  |
Arabidopsis | all | 668 (53%) | 410 (33%) | 133(11%) | 37 (3%) | 1248 (100%) | 102.63 |
 | coding | 196 | 222 | 34 | 13 | 465 | 72.84 |
 | 5'UTR1 | 193 | 73 | 34 | 7 | 307 | 215.96 |
 | 3'UTR2 | 136 | 42 | 40 | 10 | 228 | 112.02 |
 | TSS3 | 6 | 2 | 1 | 1 | 10 |  |
Brassica | all | 468 (47%) | 350 (35%) | 139 (14%) | 40 (4%) | 997 (100%) | 119.45 |
 | coding | 55 | 203 | 43 | 13 | 314 | 63.09 |
 | 5'UTR1 | 205 | 55 | 27 | 13 | 300 | 378.62 |
 | 3'UTR2 | 126 | 44 | 47 | 9 | 226 | 169.90 |
 | TSS3 | 1 | 2 | 3 | 2 | 8 |  |
potato | all | 379 (35%) | 358 (33%) | 248 (23%) | 95 (9%) | 1080 (100%) | 89.78 |
 | coding | 61 | 155 | 87 | 44 | 347 | 62.66 |
 | 5'UTR1 | 64 | 38 | 29 | 8 | 139 | 160.21 |
 | 3'UTR2 | 129 | 40 | 59 | 24 | 252 | 134.75 |
 | TSS3 | 0 | 1 | 3 | 1 | 5 |  |
tomato | all | 124 (47%) | 79 (30%) | 54 (20%) | 8 (3%) | 265 (100%) | 98.52 |
 | coding | 42 | 35 | 19 | 2 | 98 | 67.06 |
 | 5'UTR1 | 50 | 18 | 19 | 1 | 88 | 265.74 |
 | 3'UTR2 | 12 | 7 | 5 | 0 | 24 | 70.79 |
 | TSS3 | 1 | 1 | 1 | 1 | 4 |  |