From: Critical assessment of alignment procedures for LC-MS proteomics and metabolomics measurements
framework tool name | input format | version | URL | programming language | operating system | source code available | modularity |
---|---|---|---|---|---|---|---|
msInspect peptideMatch | feature data in own tab- separated format | 1.0.1 | Java, R | Windows Linux MaxOS | ✓ | ✓ | |
MZmine | raw data | 0.60 | Java | Windows Linux MacOS | ✓ | - | |
OpenMS MapAlignment | feature data in featureXML or raw or peak data in mzData format | 1.0 | C++ | Linux MacOS (Windows) | ✓ | ✓ | |
SpecArray PepMatch, PepArray | feature data in own binary format | 2.1 | C | Linux | ✓ | ✓ | |
XAlign | feature data in own tabular separated format | 03.09.2007 | request from the author | C++ | Windows | - | ✓ |
XCMS | raw data | 1.10.7 | R, C | Windows Linux MacOS | ✓ | ✓ |