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Table 1 Overview of alignment tools

From: Critical assessment of alignment procedures for LC-MS proteomics and metabolomics measurements

framework

tool name

input format

version

URL

programming language

operating system

source code available

modularity

msInspect

peptideMatch

feature data in own tab- separated format

1.0.1

http://proteomics.fhcrc.org

Java, R

Windows

Linux

MaxOS

✓

✓

MZmine

raw data

0.60

http://mzmine.sourceforge.net

Java

Windows

Linux

MacOS

✓

-

OpenMS

MapAlignment

feature data in featureXML or raw or peak data in mzData format

1.0

http://www.openms.de

C++

Linux

MacOS (Windows)

✓

✓

SpecArray

PepMatch, PepArray

feature data in own binary format

2.1

http://tools.proteomecenter.org

C

Linux

✓

✓

XAlign

feature data in own tabular separated format

03.09.2007

request from the author

C++

Windows

-

✓

XCMS

raw data

1.10.7

http://www.bioconductor.org

R, C

Windows Linux MacOS

✓

✓