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Table 2 Performance evaluation

From: CBESW: Sequence Alignment on the Playstation 3

Accession number Query Sequence Length CBESW (seconds) CBESW (MCUPS)
O29181 63 18.45 445
P03630 127 19.05 869
P02232 143 19.17 973
P05013 189 19.6 1,258
P14942 222 20.12 1,439
P00762 246 20.24 1,586
P53765 255 20.43 1,628
Q8ZGB4 361 22.04 2,137
P10318 362 22.06 2,141
P07327 374 22.39 2,179
P01008 464 23.18 2,612
P10635 497 23.69 2,737
P58229 511 24.43 2,729
P25705 553 24.74 2,916
P42357 657 26.64 3,218
P21177 729 28.06 3,390
Q38941 850 30.45 3,642
O60341 852 30.49 3,646
  1. Performance evaluation of our implementation, in terms of computational time and MCUPS. All queries were run against Swiss-Prot release 55.2 comprising 130,497,792 amino acids in 362,782 sequence entries. Eighteen query sequences of length 63 to 852 amino acids were used. The gap-open penalty used is 10 and the gap-extension penalty used was 2. The BLOSUM45 scoring matrix was used.