Skip to main content
Figure 2 | BMC Bioinformatics

Figure 2

From: MiMiR – an integrated platform for microarray data sharing, mining and analysis

Figure 2

Screen shots of the Curation and Annotation Tools. a: Visualisation using the Curation Tool of experimental information submitted online. An object model of the experiment is programmatically built and represented graphically, where nodes represent the experiment and biomaterials (organisms with a prefix BS_ and samples with a prefix BSM_), and treatments are represented by arcs. Nodes are colour-coded to represent different stages of sample preparation; for example, beige and pink nodes correspond to the extracted total RNA and hybridisation cocktail, respectively. The biomaterial information supplied by users via the Online Annotation Tool is automatically displayed in the Curation Tool and assigned with MGED Ontology terms as indicated by the prefix "MO:" (bottom table views). Where appropriate NCI Metathesaurus terms and accession numbers are also automatically assigned and indicated by the "NCI:" prefix. b: Table views of biosample details in the Annotation Tool. The table view enables rapid validation of detailed information including sample types, descriptions and names assigned to samples by users. Double clicking on an item in the table opens a pop-up window (insert) where more detailed ontology information can be viewed and edited.

Back to article page