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Table 1 Header and initial few lines of an ET (Experiment Template worksheet, vertical-format).

From: "TOF2H": A precision toolbox for rapid, high density/high coverage hydrogen-deuterium exchange mass spectrometry via an LC-MALDI approach, covering the data pipeline from spectral acquisition to HDX rate analysis

Spot_Set_Name

Timepoint

Gradient

Fraction

spot_label

Def cal?

JR

Job_run_ID

2007-12-02_VP55_5min_Capillary

900 sec

1

1

A1

D

 

28998

   

2

A3

D

  
   

3

A5

   
   

4

A7

   
   

5

A9

   
   

6

A11

   
   

7

A13

   
   

8

A15

   
   

9

A17

   
   

10

A19

   
   

11

A21

   
   

12

A23

   
   

13

A24

   
   

14

A22

   
   

15

A20

   
   

16

A18

   
  1. The complete table contained 2688 data rows (total LC fractions). The ET cross-references experiment-specific parameters (numbers of timepoints, number of fractions in each timepoint, actual deuterium exchange times, LC gradient type, spot label for each individual fraction number generated via one of four embedded spot pattern generators), with acquisition-specific parameters (spotset names, JRID values and spot label for every spectrum and every output peaklist associated with the experiment). A horizontal format (not shown) is also available for smaller experiments (for fewer than 63 total fractions as limited by the 256 column limit of MS Excel 2003). Column "JR" is currently unused.
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BMC Bioinformatics

ISSN: 1471-2105

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