Table 5 The MAE, mean depth, standard deviation of the depth (stdev) in YW923 dataset for RDPred and simulation of YW method for the 20 amino acids (AAs).

AA

RDPred

PSSM+PS

Mean depth (± stdev)

Hydrophobicity

Charge

Flexibility

K

0.24

0.28

E

0.28

0.33

2.05 (± 0.81)

-0.74

-1

1.094

D

0.33

0.37

2.08 (± 0.84)

-0.90

-1

1.068

R

0.34

0.37

2.24 (± 0.81)

-2.53

+1

1.008

Q

0.36

0.40

2.23 (± 0.97)

-0.85

0

1.037

N

0.40

0.43

2.26 (± 1.02)

-0.78

0

1.048

P

0.43

0.46

2.39 (± 1.08)

-0.12

0

1.049

S

0.47

0.51

2.38 (± 1.21)

-0.18

0

1.046

H

0.51

0.54

2.50 (± 1.19)

-0.4

+1

0.950

T

0.54

0.56

2.56 (± 1.32)

-0.05

0

0.997

G

0.58

0.62

2.43 (± 1.40)

0.48

0

1.031

A

0.64

0.68

2.77 (± 1.50)

0.62

0

0.984

Y

0.67

0.68

2.86 (± 1.30)

0.26

0

0.929

C

0.72

0.75

2.91 (± 1.39)

0.29

0

0.906

M

0.77

0.79

3.08 (± 1.58)

0.64

0

0.952

L

0.81

0.83

3.23 (± 1.53)

1.06

0

0.935

V

0.82

0.84

3.25 (± 1.59)

1.08

0

0.931

W

0.83

0.83

3.13 (± 1.43)

0.81

0

0.904

I

0.86

0.89

3.42 (± 1.64)

1.38

0

0.927

F

0.87

0.89

3.29 (± 1.58)

1.19

0

0.915