Table 7 Comparison of the prediction performance at the residue level between RDPred and simulation of YW method (using PSSM + PS features) when using three different depth indices.
| Â | Â | MSMS | DPX | SADIC | |||
|---|---|---|---|---|---|---|---|
Test type | Prediction method | PCC | MAE | PCC | MAE | PCC | MAE |
3 CV | PSSM+PS | 0.66 | 0.59 (0.049,1.502) | 0.63 | 0.55 (0.060,1.305) | 0.74 | 0.17 (0.023,0.367) |
| Â | RDPred | 0.67 | 0.56 (0.037,1.510) | 0.64 | 0.53 (0.054,1.308) | 0.75 | 0.16 (0.021,0.360) |
10 CV | PSSM+PS | 0.67 | 0.58 (0.048,1.496) | 0.63 | 0.55 (0.058,1.302) | 0.74 | 0.17 (0.023,0.363) |
| Â | RDPred | 0.67 | 0.56 (0.036,1.501) | 0.65 | 0.53 (0.053,1.307) | 0.76 | 0.16 (0.021,0.358) |