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Table 1 Superfamily detection error rates at full coverage.

From: Combining classifiers for improved classification of proteins from sequence or structure

Classifying sequences Classifying structures
Primary Secondary A tst B tst A tst + B tst Primary Secondary A tst B tst A tst + B tst
SVM - 0.2396 1.0000 0.5510 SVM - 0.2194 1.0000 0.5391
PSI-BLAST - 0.4914 0.5569 0.5182 MAMMOTH - 0.2922 0.3309 0.3081
SVM PSI-BLAST 0.2376 0.5598 0.4322 SVM MAMMOTH 0.1790 0.3367 0.2794
PSI-BLAST SVM 0.2730 0.5569 0.4078 MAMMOTH SVM 0.2053 0.3309 0.2633
  1. Each entry in the table is the fraction of proteins in the test set that are assigned to the incorrect superfamily by the given method.