Table 1 Superfamily detection error rates at full coverage.
From: Combining classifiers for improved classification of proteins from sequence or structure
Classifying sequences | Classifying structures | ||||||||
|---|---|---|---|---|---|---|---|---|---|
Primary | Secondary | A tst | B tst | A tst + B tst | Primary | Secondary | A tst | B tst | A tst + B tst |
SVM | - | 0.2396 | 1.0000 | 0.5510 | SVM | - | 0.2194 | 1.0000 | 0.5391 |
PSI-BLAST | - | 0.4914 | 0.5569 | 0.5182 | MAMMOTH | - | 0.2922 | 0.3309 | 0.3081 |
SVM | PSI-BLAST | 0.2376 | 0.5598 | 0.4322 | SVM | MAMMOTH | 0.1790 | 0.3367 | 0.2794 |
PSI-BLAST | SVM | 0.2730 | 0.5569 | 0.4078 | MAMMOTH | SVM | 0.2053 | 0.3309 | 0.2633 |