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Table 2 AutoSCOP comparison.

From: Combining classifiers for improved classification of proteins from sequence or structure

Method

Covered

Uncovered

Total

AutoSCOP

7

18

25

SVM

3

62

65

PSI-BLAST

6

24

30

SVM → PSI-BLAST

4

40

44

PSI-BLAST → SVM

3

24

27

Total

38

62

100

  1. Each entry in the table is the number of proteins from a test set of 100 proteins taken from SCOP.1.73 that are assigned to the incorrect superfamily by the given method. Each superfamily is "covered" or "uncovered," depending on whether an SVM has been trained to recognize it.
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BMC Bioinformatics

ISSN: 1471-2105

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