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Table 4 Evaluation of equivalent alignments pairs between SSMap and the two resources SIFTS and PDBSWS.

From: SSMap: A new UniProt-PDB mapping resource for the curation of structural-related information in the UniProt/Swiss-Prot Knowledgebase

 

SIFTS

PDBSWS

Number of equivalent alignments

72,158

77,818

Number of identical alignments

22,959 (32%)

16,775 (22%)

Number of non-identical alignments

49,199 (68%)

61,043 (78%)

  1. Equivalent alignments corresponded to the same (UniProtKB entry, PDB chain) pairs in both mapping sources. Mappings involving isoform sequences were not taking into account.
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BMC Bioinformatics

ISSN: 1471-2105

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