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Table 2 Coverage on all the experimentally annotated proteins in SwissProt

From: PredGPI: a GPI-anchor predictor

Predictor

TP

Cov

PredGPI

301

88.5

FragAnchor

286

84.1

BIG-PI

189

55.6

DGPI

267

78.5

GPI-SOM

278

83.8

MemType-2L (Shangai server*)

147

43.2

MemType-2L (Harvard server*) **

≤ 293

≤ 86.1

  1. The testing dataset comprises all the 340 GPI-anchored proteins experimentally annotated in SwissProt and contained in All-GPI-Set Abbreviations: TP = True Positives; Cov = Coverage.
  2. * See legend to Table 1.
  3. ** The Harvard server of MemType-2L gave an answer only for 309 out of the 340 positive examples comprised in All-GPI-Set. 262 sequences are correctly predicted in this set. The limits to the indexes scoring the performance of this server are computed in the best case, namely by considering all the non predicted proteins as correctly predicted.
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BMC Bioinformatics

ISSN: 1471-2105

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