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Table 2 The 20 star sets

From: Comparison study on k-word statistical measures for protein: From sequence to 'sequence space'

Matrix

Star set

BLOSUM62

{AS}

{C}

{DNE}

{EDQK}

{FYW}

 

{G}

{HNY}

{IMLV}

{KEQR}

{LMIV}

 

{MILV}

{NSDH}

{P}

{QERK}

{RQK}

 

{SATN}

{T S}

{VMIL}

{WFY}

{YHFW}

  1. With help of the star set, 20 amino acids are partitioned into 20 star sets based on substitution matrix BLOSUM62.