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Table 1 Predicted linkages in E. coli K12 at different confidence levels in Prolinks v2.0

From: Predicting protein linkages in bacteria: Which method is best depends on task

Method

Confidence > 0.4

Predicted #unique linkages/#unique proteins

Confidence > 0.6

Predicted #unique linkages/#unique proteins

Confidence > 0.8

Predicted #unique linkages/#unique proteins

GC

2,297/3,104

1,676/2,486

0/0

GN

11,789/2,843

4,946/1,935

625/396

RS

6,668/1,026

1,518/776

292/366

PP

10,029/1,730

2,926/1,156

1,308/779

Total

27,339/3,924

9,623/3,323

2,143/1,267

% predicted E. coli genes (4245 genes in NCBI)

92%

78%

30%

Number of overlapping linkages > 0.6

 

GC

GN

RS

GN

843

-

-

RS

100

202

-

PP

77

305

103