From: Predicting protein linkages in bacteria: Which method is best depends on task
Method | Confidence > 0.4 Predicted #unique linkages/#unique proteins | Confidence > 0.6 Predicted #unique linkages/#unique proteins | Confidence > 0.8 Predicted #unique linkages/#unique proteins |
---|---|---|---|
GC | 2,297/3,104 | 1,676/2,486 | 0/0 |
GN | 11,789/2,843 | 4,946/1,935 | 625/396 |
RS | 6,668/1,026 | 1,518/776 | 292/366 |
PP | 10,029/1,730 | 2,926/1,156 | 1,308/779 |
Total | 27,339/3,924 | 9,623/3,323 | 2,143/1,267 |
% predicted E. coli genes (4245 genes in NCBI) | 92% | 78% | 30% |
Number of overlapping linkages > 0.6 | |||
 | GC | GN | RS |
GN | 843 | - | - |
RS | 100 | 202 | - |
PP | 77 | 305 | 103 |