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Table 3 Comparison of the number of known complexes matched by the predicted clusters generated by IPCA and other previous algorithms

From: Modifying the DPClus algorithm for identifying protein complexes based on new topological structures

Overlapping Score Threshold Algorithms
  IPCA DPClus(Ov) CFinder LCMA MCODE RNSC STM
  T in = 0.9 CP in = 0.5 k = 3 NA = 0.4 V WP = 0.1 K = 1200 No Merging
  SP ≤ 2 D in = 0.9    Fluff = 0   
OS ≥ 0.1 202 191 77 136 60 170 116
OS ≥ 0.2 165 128 54 105 35 115 57
OS ≥ 0.3 116 85 42 89 27 92 26
OS ≥ 0.4 104 74 33 74 24 71 18
OS ≥ 0.5 83 52 25 55 17 52 13
OS ≥ 0.6 67 41 19 45 13 26 10
OS ≥ 0.7 42 25 13 26 11 17 6
OS ≥ 0.8 36 20 7 20 8 11 5
OS ≥ 0.9 29 15 5 13 4 6 4
OS = 1.0 28 15 5 12 4 6 4