Table 3 Comparison of the number of known complexes matched by the predicted clusters generated by IPCA and other previous algorithms
From: Modifying the DPClus algorithm for identifying protein complexes based on new topological structures
Overlapping Score Threshold | Algorithms | ||||||
|---|---|---|---|---|---|---|---|
| Â | IPCA | DPClus(Ov) | CFinder | LCMA | MCODE | RNSC | STM |
| Â | T in = 0.9 | CP in = 0.5 | k = 3 | NA = 0.4 | V WP = 0.1 | K = 1200 | No Merging |
|  | SP ≤ 2 | D in = 0.9 |  |  | Fluff = 0 |  |  |
OS ≥ 0.1 | 202 | 191 | 77 | 136 | 60 | 170 | 116 |
OS ≥ 0.2 | 165 | 128 | 54 | 105 | 35 | 115 | 57 |
OS ≥ 0.3 | 116 | 85 | 42 | 89 | 27 | 92 | 26 |
OS ≥ 0.4 | 104 | 74 | 33 | 74 | 24 | 71 | 18 |
OS ≥ 0.5 | 83 | 52 | 25 | 55 | 17 | 52 | 13 |
OS ≥ 0.6 | 67 | 41 | 19 | 45 | 13 | 26 | 10 |
OS ≥ 0.7 | 42 | 25 | 13 | 26 | 11 | 17 | 6 |
OS ≥ 0.8 | 36 | 20 | 7 | 20 | 8 | 11 | 5 |
OS ≥ 0.9 | 29 | 15 | 5 | 13 | 4 | 6 | 4 |
OS = 1.0 | 28 | 15 | 5 | 12 | 4 | 6 | 4 |