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Table 2 Local (per residue) deviation for the best and worst residues according to different MQAPs.

From: MetaMQAP: A meta-server for the quality assessment of protein models

 

10 % highest quality residues

10 % lowest quality residues

 

Method

average

std. deviation

average

std. deviation

Area under the ROC curve

TRUE DEVIATION

0.44

0.25

31.3

13.24

1.000

VERIFY3D

2.36

4.22

12.23

14.98

0.699

PROSApair

1.83

3.47

11.27

11.86

0.751

PROSA

1.71

2.71

12.98

13.77

0.752

ANOLEA

2.12

3.89

9.17

11.04

0.685

BALA

1.50

2.08

15.19

16.71

0.767

REFINER

1.85

3.71

10.55

11.83

0.732

PROQRES

1.42

2.08

16.45

15.99

0.814

MetaMQAP

1.13

0.82

20.39

16.76

0.875

  1. The table presents average 95 % confidence interval of average and standard deviation for residue deviation. For a well-performing method, the average of 10 % highest quality residues should be low and for the 10 % lowest quality residues it should be high. In general, the bigger the interval between average residue deviation for best and worst quality residues, the more accurate a method (CASP5&6+ test). In addition the area under the ROC curve (3Å cutoff) is shown
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BMC Bioinformatics

ISSN: 1471-2105

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