Skip to main content

Table 3 Assignment of protein interactors to ROG's.

From: iRefIndex: A consolidated protein interaction database with provenance

Source1

Intrctrs2

Assigned3

%4

Arb.5

New6

Unassigned7

Unique proteins8

BIND

285482

273199

95.7

0

8389

3894

40744

BioGrid

25845

17047

66.0

8742

3

53

25205

DIP

19585

18257

93.2

400

380

548

18934

HPRD

90939

90516

99.5

307

108

8

9540

IntAct

86094

82530

95.9

15

3364

185

38407

MINT

80543

77179

95.8

1

2881

482

28084

MPACT

40349

40112

99.4

0

0

237

4972

MPPI

3628

3281

90.4

178

33

136

858

OPHID

146423

145587

99.4

86

491

259

9710

ALL

778888

747708

96.0

9729

15649

5802

77827

  1. 1Interaction data source (see methods).
  2. 2Total number of interactors found in all interaction records regardless of type (includes redundant entries).
  3. 3Number of proteins assigned unambiguously to a ROG. Assignments listed in columns 5 and 6 are not included here.
  4. 4Column 3 expressed as a percentage of column 2.
  5. 5Total number of ROG assignments that were ambiguous and resolved with an arbitrary method (see ROG scores with 'L' in Figure 2).
  6. 6Total number of assignments made where a new sequence was added to the SEGUID table (see ROG scores with 'N' in Figure 2).
  7. 7Total number of protein interactors that could not be assigned to a ROG.
  8. 8Total number of unique proteins (ROG's).