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Table 3 Assignment of protein interactors to ROG's.

From: iRefIndex: A consolidated protein interaction database with provenance

Source1 Intrctrs2 Assigned3 %4 Arb.5 New6 Unassigned7 Unique proteins8
BIND 285482 273199 95.7 0 8389 3894 40744
BioGrid 25845 17047 66.0 8742 3 53 25205
DIP 19585 18257 93.2 400 380 548 18934
HPRD 90939 90516 99.5 307 108 8 9540
IntAct 86094 82530 95.9 15 3364 185 38407
MINT 80543 77179 95.8 1 2881 482 28084
MPACT 40349 40112 99.4 0 0 237 4972
MPPI 3628 3281 90.4 178 33 136 858
OPHID 146423 145587 99.4 86 491 259 9710
ALL 778888 747708 96.0 9729 15649 5802 77827
  1. 1Interaction data source (see methods).
  2. 2Total number of interactors found in all interaction records regardless of type (includes redundant entries).
  3. 3Number of proteins assigned unambiguously to a ROG. Assignments listed in columns 5 and 6 are not included here.
  4. 4Column 3 expressed as a percentage of column 2.
  5. 5Total number of ROG assignments that were ambiguous and resolved with an arbitrary method (see ROG scores with 'L' in Figure 2).
  6. 6Total number of assignments made where a new sequence was added to the SEGUID table (see ROG scores with 'N' in Figure 2).
  7. 7Total number of protein interactors that could not be assigned to a ROG.
  8. 8Total number of unique proteins (ROG's).
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BMC Bioinformatics

ISSN: 1471-2105

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