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Table 6 KEGG pathway and the highly correlated genes

From: Gene and pathway identification with L p penalized Bayesian logistic regression

Genes

Gene Description

Pathway

yj12d03.s1 and 35628)_at

33520_at

coagulation factor vii (serum prothrombin conversion accelerator)

COMPLEMENT AND COAGULATION CASCADES

31591_s_at

complement factor h

 

37550_at

coagulation factor viii, procoagulant component (hemophilia a)

 

41701_at

complement component 6

 

37175_at

serpin peptidase inhibitor, clade c (antithrombin), member 1

 

245_at and 36452_at

2023_g_at

v-akt murine thymoma viral oncogene homolog 2

FOCAL ADHESION

40438_at

protein phosphatase 1, regulatory (inhibitor) subunit 12a

 

1560_g_at

p21 (cdkn1a)-activated kinase 2

 

40162_s_at

cartilage oligomeric matrix protein

 

33994_g_at

myosin, light polypeptide 6, alkali, smooth muscle and non-muscle

 

33627_at

phosphoinositide-3-kinase, catalytic, delta polypeptide

 

659_g_at

thrombospondin 2

 

32029_at

3-phosphoinositide dependent protein kinase-1

 

39765_at

talin 2

 

41350_at

collagen, type vi, alpha 1

 

954_s_at

protein phosphatase 1, catalytic subunit, alpha isoform

 

38812_at

laminin, beta 2 (laminin s)

 

37909_at

laminin, alpha 3

 

34724_at

glucocorticoid receptor dna binding factor 1

 

1557_at

p21/cdc42/rac1-activated kinase 1

 

32140_at

33134_at

adenylate cyclase 3

GAP JUNCTION

429_f_at

tubulin, beta 2b

 

429_f_at

tubulin, beta 2a

 

1000_at

mitogen-activated protein kinase 3

 

429_f_at

tubulin, beta 4

 

33117_r_at and 34645_at

32440_at

ribosomal protein l17

RIBOSOME

32337_at

ribosomal protein l21

 

31907_at

ribosomal protein l14

 

36333_at

ribosomal protein l7

 

31952_at

ribosomal protein l6

 

32437_at

ribosomal protein s5

 

35119_at

similar to ribosomal protein l13a

 

31957_r_at

ribosomal protein, large, p1

 

34645_at

ribosomal protein s3

 

31538_at

ribosomal protein, large, p0

 

31722_at

ribosomal protein l3

 

31545_at

ribosomal protein s18

 

32466_at

ribosomal protein l41

 

34593_g_at

ribosomal protein s17

 

35119_at

ribosomal protein l13a

 

32394_s_at

ribosomal protein l23

 

41178_at

ribosomal protein l11

 

33117_r_at

ribosomal protein s12

 

36786_at

ribosomal protein l10a

 

37591_at

37956_at

aldehyde dehydrogenase 3 family, member b2

METABOLISM OF XENOBIOTICS BY CYTOCHROME P45

375_at

glutathione s-transferase theta 1

 

37707_i_at

alcohol dehydrogenase 5 (class iii), chi polypeptide

 

33396_at

glutathione s-transferase pi

 

1080_s_at

cytochrome p450, family 1, subfamily a, polypeptide 2

 

37915_at, 38079_at, and 675_at

36294_at

serine/threonine kinase 4

MAPK SIGNALING PATHWAY

39647_s_at

calcium channel, voltage-dependent, beta 2 subunit

 

38743_f_at

v-raf-1 murine leukemia viral oncogene homolog 1

 

39932_at

dual specificity phosphatase 7

 

36935_at

ras p21 protein activator (gtpase activating protein) 1

 

1292_at

dual specificity phosphatase 2

 

34006_s_at

mitogen-activated protein kinase 8

 

41432_at

ribosomal protein s6 kinase, 90 kda, polypeptide 5

 

971_s_at

transforming growth factor, beta 2

 

438_at

protein kinase, camp-dependent, catalytic, alpha

 

1239_s_at

caspase 2, apoptosis-related cysteine peptidase

 

38272_at

dual specificity phosphatase 14

 

41226_at

dual specificity phosphatase 3

 

37644_s_at

fas (tnf receptor superfamily, member 6)

 

113_i_at

microtubule-associated protein tau

 

249_at

nuclear factor of activated t-cells, cytoplasmic, calcineurin-dependent 4

 

1788_s_at

dual specificity phosphatase 4

 

31993_f_at

calcium channel, voltage-dependent, beta 2 subunit

 

38079_at

guanine nucleotide binding protein (g protein), gamma 12

 

1378_g_at

nuclear factor of kappa light polypeptide gene enhancer in b-cells 1 (p105)

 

34521_at

mitogen-activated protein kinase kinase kinase 13

 

37575_at

activating transcription factor 2

 

1327_s_at

mitogen-activated protein kinase kinase kinase 5

 

40030_at

protein kinase, y-linked

 

36168_at

fibroblast growth factor receptor 1

 

36004_at

inhibitor of kappa light polypeptide gene enhancer in b-cells, kinase gamma

 

32304_at

protein kinase c, alpha

 

39822_s_at

growth arrest and dna-damage-inducible, beta

 

31618_at

tumor protein p53 (li-fraumeni syndrome)

 

39672_at

protein tyrosine phosphatase, non-receptor type 7

 

32749_s_at

filamin a, alpha (actin binding protein 280)

 

40419_at

40273_at

sphingosine kinase 2

GLYCOSPHINGOLIPID METABOLISM

41568_at

arylsulfatase d

 

38818_at

serine palmitoyltransferase, long chain base subunit 1

 

40214_at

udp-glucose ceramide glucosyltransferase

 

41213_at

556_s_at

glutathione s-transferase m4

GLUTATHIONE METABOLISM

556_s_at

glutathione s-transferase m1

 

556_s_at

glutathione s-transferase m2 (muscle)

 

32893_s_at

gamma-glutamyltransferase 2

 

32893_s_at

gamma-glutamyltransferase 1

 

32893_s_at

gamma-glutamyltransferase-like 4

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