Table 4 Benchmarking FOSTA against the refined Hulsen et al. dataset
From: Automatically extracting functionally equivalent proteins from SwissProt
Protein family | Refined | (TO) | Basic statistics | Evaluation statistics | ||||
|---|---|---|---|---|---|---|---|---|
TP | FP | TN | FN | PPV | MCC | |||
HBB | 2 | (9) | 2 | 0 | 17 | 0 | 100.00 | 1.00 |
HOX | 30 | (41) | 30 | 0 | 3853 | 0 | 100.00 | 1.00 |
SMm | 12 | (17) | 12 | 0 | 22 | 0 | 100.00 | 1.00 |
SMc | 6 | (6) | 6 | 0 | 5 | 0 | 100.00 | 1.00 |
NR | 4 | (29) | 1 | 1 | 327 | 3 | 50.00 | 0.35 |
All | 54 | (102) | 51 | 1 | 4224 | 3 | 98.08 | 0.96 |