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Table 5 Comparing FOSTA with Inparanoid

From: Automatically extracting functionally equivalent proteins from SwissProt

Code Species Pairs Matches Mismatches % match Overlooked Rejected
APIME Apis mellifera 1 1 0 100.00% - -
BOSTA Bos taurus 3508 3451 57 98.38% 1 56
CANFA Canis familiaris 533 520 13 97.56% 1 12
CIOIN Ciona intestinalis 6 5 1 83.33% 0 1
DANRE Danio rerio 1246 1192 54 95.67% 21 33
DICDI Dictyostelium discoideum 85 69 16 81.18% 0 16
DROME Drosophila melanogaster 878 712 166 81.09% 14 152
DROPS Drosophila pseudoobscura 73 67 6 91.78% 0 6
GALGA Gallus gallus 1360 1297 63 95.37% 12 51
GASAC Gasterosteus aculeatus 1 1 0 100.00% - -
MACMU Macaca mulatta 214 207 7 96.73% 0 7
MONDO Monodelphis domestica 22 21 1 95.45% 0 1
MUSMU Mus musculus 12063 11960 103 99.15% 18 85
ORYSA Oryza sativa 1 0 1 0.00% 0 1
PANTR Pan troglodytes 412 408 4 99.03% 1 3
RATNO Rattus norvegicus 5076 5005 71 98.60% 6 65
SACCE Saccharomyces cerevisiae 1213 787 426 64.88% 49 377
TETNI Tetraodon nigroviridis 6 6 0 100.00% - -
XENTR Xenopus tropicalis 371 364 7 98.11% 2 5
- All species 27069 26073 996 96.32% 125 871
  1. Code: The species code as used by Inparanoid; Species: The full species name; Pairs: The number of one-to-one orthologue pairs described by Inparanoid between Species and Human; Matches: The number of one-to-one Inparanoid orthologue pairs (IPs) that are also found by FOSTA; Mismatches: The number of IPs pairs that are not found by FOSTA; % match: The percentage of IPs that are also found by FOSTA; Overlooked: The number of IPs where FOSTA assigns a different protein from the Species to the FOSTA family of the human protei; Rejected: The number of IPs where FOSTA does not assign any protein from the Species to the FOSTA family of the human protein.